J5_9H6I_007

3D structure

PDB id

9H6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs, mRNA, and thermospermine

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUG*CCAU*AUA(OMG)

Length

26 nucleotides

Bulged bases

9H6I|1|h1|C|546

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H6I|1|h1|C|31
9H6I|1|h1|U|32
9H6I|1|h1|U|33
9H6I|1|h1|G|34
9H6I|1|h1|U|35
*
9H6I|1|h1|A|475
9H6I|1|h1|A|476
9H6I|1|h1|A|477
9H6I|1|h1|U|478
9H6I|1|h1|A|479
9H6I|1|h1|A|480
9H6I|1|h1|C|481
*
9H6I|1|h1|G|511
9H6I|1|h1|G|512
9H6I|1|h1|A|513
9H6I|1|h1|A|514
9H6I|1|h1|U|515
9H6I|1|h1|G|516
*
9H6I|1|h1|C|545
9H6I|1|h1|C|546
9H6I|1|h1|A|547
9H6I|1|h1|U|548
*
9H6I|1|h1|A|594
9H6I|1|h1|U|595
9H6I|1|h1|A|596
9H6I|1|h1|OMG|597

Current chains

Chain h1

Ribosomal RNA 18S

Nearby chains

Chain AB

Small ribosomal subunit protein uS4y

Chain Pa

Small ribosomal subunit protein eS30z/eS30y/eS30x

Chain Va

Small ribosomal subunit protein uS12y