J5_9H6I_011

3D structure

PDB id

9H6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs, mRNA, and thermospermine

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGUAACUACUACUC*GUGCAACAAACC*GACG*CGGAU*ACGC

Length

39 nucleotides

Bulged bases

9H6I|1|h1|U|129, 9H6I|1|h1|A|131, 9H6I|1|h1|C|132, 9H6I|1|h1|U|133, 9H6I|1|h1|A|134, 9H6I|1|h1|C|135, 9H6I|1|h1|C|138, 9H6I|1|h1|U|139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H6I|1|h1|G|127
9H6I|1|h1|G|128
9H6I|1|h1|U|129
9H6I|1|h1|A|130
9H6I|1|h1|A|131
9H6I|1|h1|C|132
9H6I|1|h1|U|133
9H6I|1|h1|A|134
9H6I|1|h1|C|135
9H6I|1|h1|U|136
9H6I|1|h1|A|137
9H6I|1|h1|C|138
9H6I|1|h1|U|139
9H6I|1|h1|C|140
*
9H6I|1|h1|G|171
9H6I|1|h1|U|172
9H6I|1|h1|G|173
9H6I|1|h1|C|174
9H6I|1|h1|A|175
9H6I|1|h1|A|176
9H6I|1|h1|C|177
9H6I|1|h1|A|178
9H6I|1|h1|A|179
9H6I|1|h1|A|180
9H6I|1|h1|C|181
9H6I|1|h1|C|182
*
9H6I|1|h1|G|198
9H6I|1|h1|A|199
9H6I|1|h1|C|200
9H6I|1|h1|G|201
*
9H6I|1|h1|C|264
9H6I|1|h1|G|265
9H6I|1|h1|G|266
9H6I|1|h1|A|267
9H6I|1|h1|U|268
*
9H6I|1|h1|A|290
9H6I|1|h1|C|291
9H6I|1|h1|G|292
9H6I|1|h1|C|293

Current chains

Chain h1

Ribosomal RNA 18S

Nearby chains

Chain Ja

Small ribosomal subunit protein eS4x

Chain Ta

Small ribosomal subunit protein eS6y