J5_9H6Y_002

3D structure

PDB id

9H6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late-stage 48S Initiation Complex (LS48S IC) guided by the trans-RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAUCCAU*AUAG

Length

35 nucleotides

Bulged bases

9H6Y|1|2|A|580, 9H6Y|1|2|C|583

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H6Y|1|2|C|30
9H6Y|1|2|U|31
9H6Y|1|2|U|32
9H6Y|1|2|G|33
9H6Y|1|2|U|34
*
9H6Y|1|2|A|511
9H6Y|1|2|A|512
9H6Y|1|2|A|513
9H6Y|1|2|U|514
9H6Y|1|2|A|515
9H6Y|1|2|A|516
9H6Y|1|2|C|517
*
9H6Y|1|2|G|548
9H6Y|1|2|G|549
9H6Y|1|2|A|550
9H6Y|1|2|A|551
9H6Y|1|2|U|552
9H6Y|1|2|G|553
9H6Y|1|2|A|554
9H6Y|1|2|G|555
*
9H6Y|1|2|C|575
9H6Y|1|2|G|576
9H6Y|1|2|A|577
9H6Y|1|2|G|578
9H6Y|1|2|G|579
9H6Y|1|2|A|580
9H6Y|1|2|U|581
9H6Y|1|2|C|582
9H6Y|1|2|C|583
9H6Y|1|2|A|584
9H6Y|1|2|U|585
*
9H6Y|1|2|A|631
9H6Y|1|2|U|632
9H6Y|1|2|A|633
9H6Y|1|2|G|634

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain L

Small ribosomal subunit protein uS4

Chain Z

Small ribosomal subunit protein uS12

Chain i

Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein