J5_9H6Y_003
3D structure
- PDB id
- 9H6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Late-stage 48S Initiation Complex (LS48S IC) guided by the trans-RNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAUG*CGAAUGGC*GAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 9H6Y|1|2|A|92, 9H6Y|1|2|C|462
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9H6Y|1|2|C|53
9H6Y|1|2|A|54
9H6Y|1|2|U|55
9H6Y|1|2|G|56
*
9H6Y|1|2|C|89
9H6Y|1|2|G|90
9H6Y|1|2|A|91
9H6Y|1|2|A|92
9H6Y|1|2|U|93
9H6Y|1|2|G|94
9H6Y|1|2|G|95
9H6Y|1|2|C|96
*
9H6Y|1|2|G|424
9H6Y|1|2|A|425
9H6Y|1|2|G|426
*
9H6Y|1|2|C|447
9H6Y|1|2|A|448
9H6Y|1|2|C|449
*
9H6Y|1|2|G|460
9H6Y|1|2|G|461
9H6Y|1|2|C|462
9H6Y|1|2|A|463
9H6Y|1|2|G|464
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain G
- Small ribosomal subunit protein eS4
- Chain I
- Small ribosomal subunit protein eS6
- Chain K
- Small ribosomal subunit protein eS8
- Chain L
- Small ribosomal subunit protein uS4
- Chain a
- 40S ribosomal protein S24
- Chain k
- ATP binding cassette subfamily E member 1
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