J5_9H6Y_004

3D structure

PDB id

9H6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late-stage 48S Initiation Complex (LS48S IC) guided by the trans-RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUCUUG*CCCCUUG*CGUU*AUGGAAUAG*CAUGAU

Length

32 nucleotides

Bulged bases

9H6Y|1|2|U|867, 9H6Y|1|2|A|909

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H6Y|1|2|A|675
9H6Y|1|2|U|676
9H6Y|1|2|C|677
9H6Y|1|2|U|678
9H6Y|1|2|U|679
9H6Y|1|2|G|680
*
9H6Y|1|2|C|734
9H6Y|1|2|C|735
9H6Y|1|2|C|736
9H6Y|1|2|C|737
9H6Y|1|2|U|738
9H6Y|1|2|U|739
9H6Y|1|2|G|740
*
9H6Y|1|2|C|793
9H6Y|1|2|G|794
9H6Y|1|2|U|795
9H6Y|1|2|U|796
*
9H6Y|1|2|A|861
9H6Y|1|2|U|862
9H6Y|1|2|G|863
9H6Y|1|2|G|864
9H6Y|1|2|A|865
9H6Y|1|2|A|866
9H6Y|1|2|U|867
9H6Y|1|2|A|868
9H6Y|1|2|G|869
*
9H6Y|1|2|C|908
9H6Y|1|2|A|909
9H6Y|1|2|U|910
9H6Y|1|2|G|911
9H6Y|1|2|A|912
9H6Y|1|2|U|913

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

Small ribosomal subunit protein eS7

Chain N

Small ribosomal subunit protein uS17

Chain P

Small ribosomal subunit protein uS15

Chain Y

Small ribosomal subunit protein uS8

Chain Z

Small ribosomal subunit protein uS12