J5_9H74_002

3D structure

PDB id

9H74 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late-stage 48S Initiation Complex with eIF3 (LS48S-eIF3 IC) guided by the trans-RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAUCCAU*AUAG

Length

35 nucleotides

Bulged bases

9H74|1|2|A|580, 9H74|1|2|C|583

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H74|1|2|C|30
9H74|1|2|U|31
9H74|1|2|U|32
9H74|1|2|G|33
9H74|1|2|U|34
*
9H74|1|2|A|511
9H74|1|2|A|512
9H74|1|2|A|513
9H74|1|2|U|514
9H74|1|2|A|515
9H74|1|2|A|516
9H74|1|2|C|517
*
9H74|1|2|G|548
9H74|1|2|G|549
9H74|1|2|A|550
9H74|1|2|A|551
9H74|1|2|U|552
9H74|1|2|G|553
9H74|1|2|A|554
9H74|1|2|G|555
*
9H74|1|2|C|575
9H74|1|2|G|576
9H74|1|2|A|577
9H74|1|2|G|578
9H74|1|2|G|579
9H74|1|2|A|580
9H74|1|2|U|581
9H74|1|2|C|582
9H74|1|2|C|583
9H74|1|2|A|584
9H74|1|2|U|585
*
9H74|1|2|A|631
9H74|1|2|U|632
9H74|1|2|A|633
9H74|1|2|G|634

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain L

40S ribosomal protein S9

Chain Z

40S ribosomal protein S23

Chain i

40S ribosomal protein S30