J5_9H74_004

3D structure

PDB id

9H74 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late-stage 48S Initiation Complex with eIF3 (LS48S-eIF3 IC) guided by the trans-RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUCUUG*CCCCUUG*CGUU*AUGGAAUAG*CAUGAU

Length

32 nucleotides

Bulged bases

9H74|1|2|U|867, 9H74|1|2|A|909

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H74|1|2|A|675
9H74|1|2|U|676
9H74|1|2|C|677
9H74|1|2|U|678
9H74|1|2|U|679
9H74|1|2|G|680
*
9H74|1|2|C|734
9H74|1|2|C|735
9H74|1|2|C|736
9H74|1|2|C|737
9H74|1|2|U|738
9H74|1|2|U|739
9H74|1|2|G|740
*
9H74|1|2|C|793
9H74|1|2|G|794
9H74|1|2|U|795
9H74|1|2|U|796
*
9H74|1|2|A|861
9H74|1|2|U|862
9H74|1|2|G|863
9H74|1|2|G|864
9H74|1|2|A|865
9H74|1|2|A|866
9H74|1|2|U|867
9H74|1|2|A|868
9H74|1|2|G|869
*
9H74|1|2|C|908
9H74|1|2|A|909
9H74|1|2|U|910
9H74|1|2|G|911
9H74|1|2|A|912
9H74|1|2|U|913

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

40S ribosomal protein S7

Chain N

40S ribosomal protein S11

Chain P

40S ribosomal protein S13

Chain Y

Ribosomal protein S15a

Chain Z

40S ribosomal protein S23