J5_9HA2_004

3D structure

PDB id

9HA2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pooled 50S subunit C_(L22)- precursor states supplemented with Api137 - Alternative PET exit Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

4.17 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

9HA2|1|A|C|1675, 9HA2|1|A|U|1758, 9HA2|1|A|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9HA2_004 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.2995

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

9HA2|1|A|G|1674
9HA2|1|A|C|1675
9HA2|1|A|A|1676
9HA2|1|A|A|1677
9HA2|1|A|A|1678
9HA2|1|A|A|1679
9HA2|1|A|U|1680
9HA2|1|A|G|1681
9HA2|1|A|G|1682
*
9HA2|1|A|C|1706
9HA2|1|A|G|1707
*
9HA2|1|A|U|1751
9HA2|1|A|C|1752
*
9HA2|1|A|G|1756
9HA2|1|A|A|1757
9HA2|1|A|U|1758
9HA2|1|A|A|1759
9HA2|1|A|C|1760
9HA2|1|A|C|1761
9HA2|1|A|A|1762
9HA2|1|A|G|1763
9HA2|1|A|C|1764
*
9HA2|1|A|G|1988
9HA2|1|A|G|1989
9HA2|1|A|C|1990

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain K

Large ribosomal subunit protein uL14

Chain P

Large ribosomal subunit protein bL19