J5_9HA3_002

3D structure

PDB id

9HA3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pooled 50S subunit C_(L22)-~H61 precursor states supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.62 Å

Loop

Sequence

CAG*CGUAC*GGG*CA*UG

Length

15 nucleotides

Bulged bases

9HA3|1|A|A|532, 9HA3|1|A|U|562

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9HA3_002 not in the Motif Atlas

Homologous match to J5_5J7L_014

Geometric discrepancy: 0.1965

The information below is about J5_5J7L_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_43153.5

Basepair signature

cWW-cWW-cWW-F-cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

9HA3|1|A|C|531
9HA3|1|A|A|532
9HA3|1|A|G|533
*
9HA3|1|A|C|560
9HA3|1|A|G|561
9HA3|1|A|U|562
9HA3|1|A|A|563
9HA3|1|A|C|564
*
9HA3|1|A|G|577
9HA3|1|A|G|578
9HA3|1|A|G|579
*
9HA3|1|A|C|1261
9HA3|1|A|A|1262
*
9HA3|1|A|U|2017
9HA3|1|A|G|2018

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain Q

Large ribosomal subunit protein bL20

Chain R

Large ribosomal subunit protein bL21