J5_9HA5_004

3D structure

PDB id

9HA5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pooled 50S subunit C_L2 precursor states supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

9HA5|1|A|U|1758, 9HA5|1|A|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9HA5_004 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.124

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

9HA5|1|A|G|1674
9HA5|1|A|C|1675
9HA5|1|A|A|1676
9HA5|1|A|A|1677
9HA5|1|A|A|1678
9HA5|1|A|A|1679
9HA5|1|A|U|1680
9HA5|1|A|G|1681
9HA5|1|A|G|1682
*
9HA5|1|A|C|1706
9HA5|1|A|G|1707
*
9HA5|1|A|U|1751
9HA5|1|A|C|1752
*
9HA5|1|A|G|1756
9HA5|1|A|A|1757
9HA5|1|A|U|1758
9HA5|1|A|A|1759
9HA5|1|A|C|1760
9HA5|1|A|C|1761
9HA5|1|A|A|1762
9HA5|1|A|G|1763
9HA5|1|A|C|1764
*
9HA5|1|A|G|1988
9HA5|1|A|G|1989
9HA5|1|A|C|1990

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain K

Large ribosomal subunit protein uL14

Chain P

Large ribosomal subunit protein bL19