J5_9HA6_001

3D structure

PDB id

9HA6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mature 50S subunit supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAUC*GAGG

Length

24 nucleotides

Bulged bases

9HA6|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9HA6|1|A|C|47
9HA6|1|A|G|48
9HA6|1|A|A|49
9HA6|1|A|U|50
9HA6|1|A|G|51
9HA6|1|A|A|52
9HA6|1|A|A|53
9HA6|1|A|G|54
*
9HA6|1|A|C|116
9HA6|1|A|G|117
9HA6|1|A|A|118
9HA6|1|A|A|119
9HA6|1|A|U|120
9HA6|1|A|G|121
*
9HA6|1|A|C|130
9HA6|1|A|A|131
*
9HA6|1|A|U|148
9HA6|1|A|A|149
9HA6|1|A|U|150
9HA6|1|A|C|151
*
9HA6|1|A|G|175
9HA6|1|A|A|176
9HA6|1|A|G|177
9HA6|1|A|G|178

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL34