J5_9HA6_005

3D structure

PDB id

9HA6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mature 50S subunit supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

GAAAGACC*GGAUAACAG*CCUCGAUGUC*GGUUUAG*CGGUCC

Length

40 nucleotides

Bulged bases

9HA6|1|A|A|2448, 9HA6|1|A|G|2505, 9HA6|1|A|U|2609, 9HA6|1|A|C|2610

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9HA6|1|A|G|2057
9HA6|1|A|A|2058
9HA6|1|A|A|2059
9HA6|1|A|A|2060
9HA6|1|A|G|2061
9HA6|1|A|A|2062
9HA6|1|A|C|2063
9HA6|1|A|C|2064
*
9HA6|1|A|G|2446
9HA6|1|A|G|2447
9HA6|1|A|A|2448
9HA6|1|A|U|2449
9HA6|1|A|A|2450
9HA6|1|A|A|2451
9HA6|1|A|C|2452
9HA6|1|A|A|2453
9HA6|1|A|G|2454
*
9HA6|1|A|C|2498
9HA6|1|A|C|2499
9HA6|1|A|U|2500
9HA6|1|A|C|2501
9HA6|1|A|G|2502
9HA6|1|A|A|2503
9HA6|1|A|U|2504
9HA6|1|A|G|2505
9HA6|1|A|U|2506||A
9HA6|1|A|C|2507
*
9HA6|1|A|G|2582
9HA6|1|A|G|2583
9HA6|1|A|U|2584
9HA6|1|A|U|2585
9HA6|1|A|U|2586
9HA6|1|A|A|2587
9HA6|1|A|G|2588
*
9HA6|1|A|C|2606
9HA6|1|A|G|2607
9HA6|1|A|G|2608
9HA6|1|A|U|2609
9HA6|1|A|C|2610
9HA6|1|A|C|2611

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain 0

Large ribosomal subunit protein bL32

Chain C

Large ribosomal subunit protein uL2

Chain D

50S ribosomal protein L3

Chain E

Large ribosomal subunit protein uL4

Chain L

Large ribosomal subunit protein uL15

Chain M

50S ribosomal protein L16

Chain S

Large ribosomal subunit protein uL22

Chain z

Apidaecins type 22