J5_9HAI_004

3D structure

PDB id

9HAI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pooled 50S subunit C-CP_L2-L28 precursor states supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

9HAI|1|A|U|1758, 9HAI|1|A|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9HAI_004 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.1479

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

9HAI|1|A|G|1674
9HAI|1|A|C|1675
9HAI|1|A|A|1676
9HAI|1|A|A|1677
9HAI|1|A|A|1678
9HAI|1|A|A|1679
9HAI|1|A|U|1680
9HAI|1|A|G|1681
9HAI|1|A|G|1682
*
9HAI|1|A|C|1706
9HAI|1|A|G|1707
*
9HAI|1|A|U|1751
9HAI|1|A|C|1752
*
9HAI|1|A|G|1756
9HAI|1|A|A|1757
9HAI|1|A|U|1758
9HAI|1|A|A|1759
9HAI|1|A|C|1760
9HAI|1|A|C|1761
9HAI|1|A|A|1762
9HAI|1|A|G|1763
9HAI|1|A|C|1764
*
9HAI|1|A|G|1988
9HAI|1|A|G|1989
9HAI|1|A|C|1990

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain K

Large ribosomal subunit protein uL14

Chain P

Large ribosomal subunit protein bL19