J5_9HLZ_002

3D structure

PDB id

9HLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activators Aep1, Aep2 and Atp25 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAAGUA*UGAC*GUUU*AC*GAGAAUG

Length

23 nucleotides

Bulged bases

9HLZ|1|AA|U|1288

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9HLZ|1|AA|C|483
9HLZ|1|AA|A|484
9HLZ|1|AA|A|485
9HLZ|1|AA|G|486
9HLZ|1|AA|U|487
9HLZ|1|AA|A|488
*
9HLZ|1|AA|U|577
9HLZ|1|AA|G|578
9HLZ|1|AA|A|579
9HLZ|1|AA|C|580
*
9HLZ|1|AA|G|700
9HLZ|1|AA|U|701
9HLZ|1|AA|U|702
9HLZ|1|AA|U|703
*
9HLZ|1|AA|A|1229
9HLZ|1|AA|C|1230
*
9HLZ|1|AA|G|1283
9HLZ|1|AA|A|1284
9HLZ|1|AA|G|1285
9HLZ|1|AA|A|1286
9HLZ|1|AA|A|1287
9HLZ|1|AA|U|1288
9HLZ|1|AA|G|1289

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain 44

Large ribosomal subunit protein mL43

Chain DD

Large ribosomal subunit protein uL4m

Chain JJ

Large ribosomal subunit protein uL15m

Chain NN

Large ribosomal subunit protein bL21m