J5_9HM0_004

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGAA*UGUAAAC*GU*AU*ACAG

Length

19 nucleotides

Bulged bases

9HM0|1|r|A|67, 9HM0|1|r|A|109, 9HM0|1|r|C|356, 9HM0|1|r|A|357

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9HM0|1|r|C|65
9HM0|1|r|G|66
9HM0|1|r|A|67
9HM0|1|r|A|68
*
9HM0|1|r|U|106
9HM0|1|r|G|107
9HM0|1|r|U|108
9HM0|1|r|A|109
9HM0|1|r|A|110
9HM0|1|r|A|111
9HM0|1|r|C|112
*
9HM0|1|r|G|321
9HM0|1|r|U|322
*
9HM0|1|r|A|342
9HM0|1|r|U|343
*
9HM0|1|r|A|355
9HM0|1|r|C|356
9HM0|1|r|A|357
9HM0|1|r|G|358

Current chains

Chain r

15S mitochondrial rRNA

Nearby chains

Chain 2

Small ribosomal subunit protein mS41

Chain II

Large ribosomal subunit protein uL14m

Chain MM

Large ribosomal subunit protein bL19m

Chain P

Small ribosomal subunit protein bS16m