J5_9HM0_005
3D structure
- PDB id
- 9HM0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UGGA*UAUAAUA*UAAUUUUU*AUAUAUUAAUAU*AAAAGAA
- Length
- 38 nucleotides
- Bulged bases
- 9HM0|1|r|U|1272, 9HM0|1|r|U|1365, 9HM0|1|r|U|1366, 9HM0|1|r|A|1367, 9HM0|1|r|A|1368, 9HM0|1|r|A|1370
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9HM0|1|r|U|1008
9HM0|1|r|G|1009
9HM0|1|r|G|1010
9HM0|1|r|A|1011
*
9HM0|1|r|U|1267
9HM0|1|r|A|1268
9HM0|1|r|U|1269
9HM0|1|r|A|1270
9HM0|1|r|A|1271
9HM0|1|r|U|1272
9HM0|1|r|A|1273
*
9HM0|1|r|U|1336
9HM0|1|r|A|1337
9HM0|1|r|A|1338
9HM0|1|r|U|1339
9HM0|1|r|U|1340
9HM0|1|r|U|1341
9HM0|1|r|U|1342
9HM0|1|r|U|1343
*
9HM0|1|r|A|1360
9HM0|1|r|U|1361
9HM0|1|r|A|1362
9HM0|1|r|U|1363
9HM0|1|r|A|1364
9HM0|1|r|U|1365
9HM0|1|r|U|1366
9HM0|1|r|A|1367
9HM0|1|r|A|1368
9HM0|1|r|U|1369
9HM0|1|r|A|1370
9HM0|1|r|U|1371
*
9HM0|1|r|A|1402
9HM0|1|r|A|1403
9HM0|1|r|A|1404
9HM0|1|r|A|1405
9HM0|1|r|G|1406
9HM0|1|r|A|1407
9HM0|1|r|A|1408
Current chains
- Chain r
- 15S mitochondrial rRNA
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain G
- Small ribosomal subunit protein uS7m
- Chain I
- Small ribosomal subunit protein uS9m
- Chain M
- Small ribosomal subunit protein uS13m
- Chain W
- Small ribosomal subunit protein mS29
- Chain t
- Transfer RNA; tRNA
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