J5_9HY6_001

3D structure

PDB id

9HY6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome with nascent chain at linker length of 31 amino acids, with mRNA, P-site and A-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

9HY6|1|b|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9HY6|1|b|C|47
9HY6|1|b|G|48
9HY6|1|b|A|49
9HY6|1|b|U|50
9HY6|1|b|G|51
9HY6|1|b|A|52
9HY6|1|b|A|53
9HY6|1|b|G|54
*
9HY6|1|b|C|116
9HY6|1|b|G|117
9HY6|1|b|A|118
9HY6|1|b|A|119
9HY6|1|b|U|120
9HY6|1|b|G|121
*
9HY6|1|b|C|130
9HY6|1|b|A|131
*
9HY6|1|b|U|148
9HY6|1|b|A|149
9HY6|1|b|U|150
*
9HY6|1|b|A|176
9HY6|1|b|G|177
9HY6|1|b|G|178

Current chains

Chain b

23S rRNA

Nearby chains

Chain 6

Large ribosomal subunit protein bL34