J5_9HYM_004
3D structure
- PDB id
- 9HYM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of WT E.coli ribosome with complexed filament nascent chain at length 34, with mRNA, P-site and A-site tRNAs, and mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GCAAAAUGG*CG*UC*GAUACCAGC*GGC
- Length
- 25 nucleotides
- Bulged bases
- 9HYM|1|b|G|1763
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9HYM_004 not in the Motif Atlas
- Homologous match to J5_7A0S_005
- Geometric discrepancy: 0.2369
- The information below is about J5_7A0S_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 10
Unit IDs
9HYM|1|b|G|1674
9HYM|1|b|C|1675
9HYM|1|b|A|1676
9HYM|1|b|A|1677
9HYM|1|b|A|1678
9HYM|1|b|A|1679
9HYM|1|b|U|1680
9HYM|1|b|G|1681
9HYM|1|b|G|1682
*
9HYM|1|b|C|1706
9HYM|1|b|G|1707
*
9HYM|1|b|U|1751
9HYM|1|b|C|1752
*
9HYM|1|b|G|1756
9HYM|1|b|A|1757
9HYM|1|b|U|1758
9HYM|1|b|A|1759
9HYM|1|b|C|1760
9HYM|1|b|C|1761
9HYM|1|b|A|1762
9HYM|1|b|G|1763
9HYM|1|b|C|1764
*
9HYM|1|b|G|1988
9HYM|1|b|G|1989
9HYM|1|b|C|1990
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain d
- 50S ribosomal protein L3
- Chain k
- Large ribosomal subunit protein uL14
- Chain p
- Large ribosomal subunit protein bL19
Coloring options: