J5_9I1W_003
3D structure
- PDB id
- 9I1W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High resolution structure of the thermophilic 60S ribosomal subunit of Chaetomium thermophilum
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- CGAG*CGUAA*UGAACGUAG*CGA*UAGG(A2M)G
- Length
- 27 nucleotides
- Bulged bases
- 9I1W|1|1|U|707, 9I1W|1|1|G|767
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9I1W|1|1|C|663
9I1W|1|1|G|664
9I1W|1|1|A|665
9I1W|1|1|G|666
*
9I1W|1|1|C|690
9I1W|1|1|G|691
9I1W|1|1|U|692
9I1W|1|1|A|693
9I1W|1|1|A|694
*
9I1W|1|1|U|701
9I1W|1|1|G|702
9I1W|1|1|A|703
9I1W|1|1|A|704
9I1W|1|1|C|705
9I1W|1|1|G|706
9I1W|1|1|U|707
9I1W|1|1|A|708
9I1W|1|1|G|709
*
9I1W|1|1|C|731
9I1W|1|1|G|732
9I1W|1|1|A|733
*
9I1W|1|1|U|764
9I1W|1|1|A|765
9I1W|1|1|G|766
9I1W|1|1|G|767
9I1W|1|1|A2M|768
9I1W|1|1|G|769
Current chains
- Chain 1
- 26S rRNA
Nearby chains
- Chain LC
- 60S ribosomal protein L4-like protein
- Chain LL
- 60S ribosomal protein L13
- Chain LQ
- Ribosomal protein L18-like protein
- Chain La
- 60S ribosomal protein L28-like protein
- Chain Lb
- 60S ribosomal protein L29
- Chain Li
- 60S ribosomal protein L36
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