J5_9I1W_004
3D structure
- PDB id
- 9I1W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High resolution structure of the thermophilic 60S ribosomal subunit of Chaetomium thermophilum
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- GCAAAAUAG*(PSU)G*UG*CGGACAGGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 9I1W|1|1|G|2079, 9I1W|1|1|G|2084
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9I1W|1|1|G|1886
9I1W|1|1|C|1887
9I1W|1|1|A|1888
9I1W|1|1|A|1889
9I1W|1|1|A|1890
9I1W|1|1|A|1891
9I1W|1|1|U|1892
9I1W|1|1|A|1893
9I1W|1|1|G|1894
*
9I1W|1|1|PSU|1918
9I1W|1|1|G|1919
*
9I1W|1|1|U|2072
9I1W|1|1|G|2073
*
9I1W|1|1|C|2077
9I1W|1|1|G|2078
9I1W|1|1|G|2079
9I1W|1|1|A|2080
9I1W|1|1|C|2081
9I1W|1|1|A|2082
9I1W|1|1|G|2083
9I1W|1|1|G|2084
9I1W|1|1|G|2085
*
9I1W|1|1|C|2294
9I1W|1|1|A|2295
9I1W|1|1|C|2296
Current chains
- Chain 1
- 26S rRNA
Nearby chains
- Chain LB
- 60S ribosomal protein L3-like protein
- Chain LR
- Ribosomal protein L19
- Chain LV
- 60S ribosomal protein l23-like protein
- Chain LW
- 60S ribosomal protein L24-like protein
Coloring options: