J5_9I1W_005
3D structure
- PDB id
- 9I1W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High resolution structure of the thermophilic 60S ribosomal subunit of Chaetomium thermophilum
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- AGAAGACC*(OMG)GAUAACUG*CUU(5MC)GAUGUC*GGUUUAG*(PSU)AGUUU
- Length
- 40 nucleotides
- Bulged bases
- 9I1W|1|1|A|2367, 9I1W|1|1|A|2776, 9I1W|1|1|U|2777, 9I1W|1|1|C|2780, 9I1W|1|1|G|2833, 9I1W|1|1|U|2834, 9I1W|1|1|U|2937, 9I1W|1|1|U|2938
- QA status
- Modified nucleotides: OMG, 5MC, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9I1W|1|1|A|2362
9I1W|1|1|G|2363
9I1W|1|1|A|2364
9I1W|1|1|A|2365
9I1W|1|1|G|2366
9I1W|1|1|A|2367
9I1W|1|1|C|2368
9I1W|1|1|C|2369
*
9I1W|1|1|OMG|2774
9I1W|1|1|G|2775
9I1W|1|1|A|2776
9I1W|1|1|U|2777
9I1W|1|1|A|2778
9I1W|1|1|A|2779
9I1W|1|1|C|2780
9I1W|1|1|U|2781
9I1W|1|1|G|2782
*
9I1W|1|1|C|2826
9I1W|1|1|U|2827
9I1W|1|1|U|2828
9I1W|1|1|5MC|2829
9I1W|1|1|G|2830
9I1W|1|1|A|2831
9I1W|1|1|U|2832
9I1W|1|1|G|2833
9I1W|1|1|U|2834
9I1W|1|1|C|2835
*
9I1W|1|1|G|2910
9I1W|1|1|G|2911
9I1W|1|1|U|2912
9I1W|1|1|U|2913
9I1W|1|1|U|2914
9I1W|1|1|A|2915
9I1W|1|1|G|2916
*
9I1W|1|1|PSU|2934
9I1W|1|1|A|2935
9I1W|1|1|G|2936
9I1W|1|1|U|2937
9I1W|1|1|U|2938
9I1W|1|1|U|2939
Current chains
- Chain 1
- 26S rRNA
Nearby chains
- Chain LA
- 60S ribosomal protein L2-like protein
- Chain LB
- 60S ribosomal protein L3-like protein
- Chain LC
- 60S ribosomal protein L4-like protein
- Chain Lb
- 60S ribosomal protein L29
- Chain PC
- Nascent chain C-terminus
Coloring options: