J5_9I1W_006
3D structure
- PDB id
- 9I1W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High resolution structure of the thermophilic 60S ribosomal subunit of Chaetomium thermophilum
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- (PSU)(OMU)GA*UUUG*CA*UG*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 9I1W|1|1|G|2381, 9I1W|1|1|A|2758, 9I1W|1|1|G|2759, 9I1W|1|1|A|2760, 9I1W|1|1|A|2761, 9I1W|1|1|A|2762
- QA status
- Modified nucleotides: PSU, OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9I1W|1|1|PSU|2379
9I1W|1|1|OMU|2380
9I1W|1|1|G|2381
9I1W|1|1|A|2382
*
9I1W|1|1|U|2570
9I1W|1|1|U|2571
9I1W|1|1|U|2572
9I1W|1|1|G|2573
*
9I1W|1|1|C|2586
9I1W|1|1|A|2587
*
9I1W|1|1|U|2609
9I1W|1|1|G|2610
*
9I1W|1|1|C|2757
9I1W|1|1|A|2758
9I1W|1|1|G|2759
9I1W|1|1|A|2760
9I1W|1|1|A|2761
9I1W|1|1|A|2762
9I1W|1|1|A|2763
Current chains
- Chain 1
- 26S rRNA
Nearby chains
- Chain 9
- E-site tRNA (5'-R(P*CP*CP*A)-3')
- Chain LA
- 60S ribosomal protein L2-like protein
- Chain LN
- Ribosomal protein L15
- Chain LQ
- Ribosomal protein L18-like protein
- Chain LT
- 60S ribosomal protein l21-like protein
- Chain La
- 60S ribosomal protein L28-like protein
- Chain Lo
- 60S ribosomal protein L44-like protein
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