J5_9I2E_001

3D structure

PDB id

9I2E (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMT1-NAC bound human ribosome (combined translational states)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

GUGG*CGA*UUG*CGCG*CC

Length

16 nucleotides

Bulged bases

9I2E|1|CC|U|8, 9I2E|1|CC|G|9, 9I2E|1|CC|C|57

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9I2E_001 not in the Motif Atlas

Homologous match to J5_9J5P_001

Geometric discrepancy: 0.3832

The information below is about J5_9J5P_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_97113.1

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

9I2E|1|CC|G|7
9I2E|1|CC|U|8
9I2E|1|CC|G|9
9I2E|1|CC|G|10
*
9I2E|1|CC|C|25
9I2E|1|CC|G|26
9I2E|1|CC|A|27
*
9I2E|1|CC|U|43
9I2E|1|CC|U|44
9I2E|1|CC|G|45
*
9I2E|1|CC|C|55
9I2E|1|CC|G|56
9I2E|1|CC|C|57
9I2E|1|CC|G|58
*
9I2E|1|CC|C|74
9I2E|1|CC|C|75

Current chains

Chain CC

E-site tRNA

Nearby chains

Chain Lo

60S ribosomal protein L36a