J5_9I3L_003
3D structure
- PDB id
- 9I3L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of E.coli ribosome with filamin mutant Y719E nascent chain at linker length of 47 amino acids, with tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGACUU*AGAC*GUUC*GC*GCGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 9I3L|1|b|U|1257
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9I3L_003 not in the Motif Atlas
- Homologous match to J5_7A0S_004
- Geometric discrepancy: 0.0838
- The information below is about J5_7A0S_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.6
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
9I3L|1|b|C|586
9I3L|1|b|G|587
9I3L|1|b|A|588
9I3L|1|b|C|589
9I3L|1|b|U|590
9I3L|1|b|U|591
*
9I3L|1|b|A|670
9I3L|1|b|G|671
9I3L|1|b|A|672
9I3L|1|b|C|673
*
9I3L|1|b|G|811
9I3L|1|b|U|812
9I3L|1|b|U|813
9I3L|1|b|C|814
*
9I3L|1|b|G|1197
9I3L|1|b|C|1198
*
9I3L|1|b|G|1252
9I3L|1|b|C|1253
9I3L|1|b|G|1254
9I3L|1|b|A|1255
9I3L|1|b|A|1256
9I3L|1|b|U|1257
9I3L|1|b|G|1258
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain 7
- Large ribosomal subunit protein bL35
- Chain e
- Large ribosomal subunit protein uL4
- Chain l
- Large ribosomal subunit protein uL15
- Chain q
- Large ribosomal subunit protein bL20
- Chain r
- Large ribosomal subunit protein bL21
Coloring options: