J5_9I3L_006
3D structure
- PDB id
- 9I3L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of E.coli ribosome with filamin mutant Y719E nascent chain at linker length of 47 amino acids, with tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAAAGACC*GGAUAACAGG*CACCUCGAUGUC*GGUUUAG*CGGUCC
- Length
- 43 nucleotides
- Bulged bases
- 9I3L|1|b|A|2452, 9I3L|1|b|U|2453, 9I3L|1|b|U|2613
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9I3L|1|b|G|2061
9I3L|1|b|A|2062
9I3L|1|b|A|2063
9I3L|1|b|A|2064
9I3L|1|b|G|2065
9I3L|1|b|A|2066
9I3L|1|b|C|2067
9I3L|1|b|C|2068
*
9I3L|1|b|G|2450
9I3L|1|b|G|2451
9I3L|1|b|A|2452
9I3L|1|b|U|2453
9I3L|1|b|A|2454
9I3L|1|b|A|2455
9I3L|1|b|C|2456
9I3L|1|b|A|2457
9I3L|1|b|G|2458
9I3L|1|b|G|2459
*
9I3L|1|b|C|2500
9I3L|1|b|A|2501
9I3L|1|b|C|2502
9I3L|1|b|C|2503
9I3L|1|b|U|2504
9I3L|1|b|C|2505
9I3L|1|b|G|2506
9I3L|1|b|A|2507
9I3L|1|b|U|2508
9I3L|1|b|G|2509
9I3L|1|b|U|2510
9I3L|1|b|C|2511
*
9I3L|1|b|G|2586
9I3L|1|b|G|2587
9I3L|1|b|U|2588
9I3L|1|b|U|2589
9I3L|1|b|U|2590
9I3L|1|b|A|2591
9I3L|1|b|G|2592
*
9I3L|1|b|C|2610
9I3L|1|b|G|2611
9I3L|1|b|G|2612
9I3L|1|b|U|2613
9I3L|1|b|C|2614
9I3L|1|b|C|2615
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain 3
- Large ribosomal subunit protein bL32
- Chain Z
- Transfer RNA; tRNA
- Chain c
- Large ribosomal subunit protein uL2
- Chain d
- 50S ribosomal protein L3
- Chain e
- Large ribosomal subunit protein uL4
- Chain l
- Large ribosomal subunit protein uL15
- Chain m
- 50S ribosomal protein L16
- Chain s
- Large ribosomal subunit protein uL22
- Chain y
- Large ribosomal subunit protein bL27
- Chain z
- Gelation factor
Coloring options: