J5_9I5T_002

3D structure

PDB id

9I5T (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit of P. gingivalis ribosome with Lefamulin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGG*CGUGC*GAA*UA*UG

Length

15 nucleotides

Bulged bases

9I5T|1|A|G|555, 9I5T|1|A|U|584

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I5T|1|A|C|554
9I5T|1|A|G|555
9I5T|1|A|G|556
*
9I5T|1|A|C|582
9I5T|1|A|G|583
9I5T|1|A|U|584
9I5T|1|A|G|585
9I5T|1|A|C|586
*
9I5T|1|A|G|599
9I5T|1|A|A|600
9I5T|1|A|A|601
*
9I5T|1|A|U|1290
9I5T|1|A|A|1291
*
9I5T|1|A|U|2027
9I5T|1|A|G|2028

Current chains

Chain A

23S rRNA

Nearby chains

Chain 4

Large ribosomal subunit protein bL32

Chain F

Large ribosomal subunit protein uL4

Chain T

Large ribosomal subunit protein bL20

Chain U

Large ribosomal subunit protein bL21

Chain V

Large ribosomal subunit protein uL22