J5_9I5T_004

3D structure

PDB id

9I5T (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit of P. gingivalis ribosome with Lefamulin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GCAAAAUGG*CG*CC*GAAACCAGG*CAC

Length

25 nucleotides

Bulged bases

9I5T|1|A|A|1767, 9I5T|1|A|G|1772

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I5T|1|A|G|1710
9I5T|1|A|C|1711
9I5T|1|A|A|1712
9I5T|1|A|A|1713
9I5T|1|A|A|1714
9I5T|1|A|A|1715
9I5T|1|A|U|1716
9I5T|1|A|G|1717
9I5T|1|A|G|1718
*
9I5T|1|A|C|1742
9I5T|1|A|G|1743
*
9I5T|1|A|C|1760
9I5T|1|A|C|1761
*
9I5T|1|A|G|1765
9I5T|1|A|A|1766
9I5T|1|A|A|1767
9I5T|1|A|A|1768
9I5T|1|A|C|1769
9I5T|1|A|C|1770
9I5T|1|A|A|1771
9I5T|1|A|G|1772
9I5T|1|A|G|1773
*
9I5T|1|A|C|1998
9I5T|1|A|A|1999
9I5T|1|A|C|2000

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

Large ribosomal subunit protein uL3

Chain N

Large ribosomal subunit protein uL14

Chain S

Large ribosomal subunit protein bL19