J5_9I5V_004
3D structure
- PDB id
- 9I5V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S P. gingivalis ribosome erm-delta-porN strain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- (6MA)(MA6)(6MA)AGACC*GGA(OMU)AACA*U(5OC)G(2MA)UGUC*GGUUCAG*CGGUCU
- Length
- 37 nucleotides
- Bulged bases
- 9I5V|1|A|A|2072, 9I5V|1|A|A|2449, 9I5V|1|A|OMU|2450, 9I5V|1|A|G|2506, 9I5V|1|A|U|2507, 9I5V|1|A|U|2610, 9I5V|1|A|C|2611
- QA status
- Modified nucleotides: 6MA, MA6, OMU, 5OC, 2MA
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9I5V|1|A|6MA|2067
9I5V|1|A|MA6|2068
9I5V|1|A|6MA|2069
9I5V|1|A|A|2070
9I5V|1|A|G|2071
9I5V|1|A|A|2072
9I5V|1|A|C|2073
9I5V|1|A|C|2074
*
9I5V|1|A|G|2447
9I5V|1|A|G|2448
9I5V|1|A|A|2449
9I5V|1|A|OMU|2450
9I5V|1|A|A|2451
9I5V|1|A|A|2452
9I5V|1|A|C|2453
9I5V|1|A|A|2454
*
9I5V|1|A|U|2501
9I5V|1|A|5OC|2502
9I5V|1|A|G|2503
9I5V|1|A|2MA|2504
9I5V|1|A|U|2505
9I5V|1|A|G|2506
9I5V|1|A|U|2507
9I5V|1|A|C|2508
*
9I5V|1|A|G|2583
9I5V|1|A|G|2584
9I5V|1|A|U|2585
9I5V|1|A|U|2586
9I5V|1|A|C|2587
9I5V|1|A|A|2588
9I5V|1|A|G|2589
*
9I5V|1|A|C|2607
9I5V|1|A|G|2608
9I5V|1|A|G|2609
9I5V|1|A|U|2610
9I5V|1|A|C|2611
9I5V|1|A|U|2612
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 4
- Large ribosomal subunit protein bL32
- Chain D
- Large ribosomal subunit protein uL2
- Chain E
- Large ribosomal subunit protein uL3
- Chain F
- Large ribosomal subunit protein uL4
- Chain O
- Large ribosomal subunit protein uL15
- Chain P
- Large ribosomal subunit protein uL16
Coloring options: