Loop J5_9I5V

3D structure

PDB id: 9I5V (explore in PDB, NAKB, or RNA 3D Hub)
Description: 70S P. gingivalis ribosome erm-delta-porN strain
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å

Loop

Sequence: CUAG*CGUGAAGGAAGACAGU*AGGAUUGUAAACUUCUUUUAU*ACCGUAAGAAACA*UGCGAG
Length: 60 nucleotides
Bulged bases: None detected
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

9I5V|1|a|C|36
9I5V|1|a|U|37
9I5V|1|a|A|38
9I5V|1|a|G|39
*
9I5V|1|a|C|408
9I5V|1|a|G|409
9I5V|1|a|U|410
9I5V|1|a|G|411
9I5V|1|a|A|412
9I5V|1|a|A|413
9I5V|1|a|G|414
9I5V|1|a|G|415
9I5V|1|a|A|416
9I5V|1|a|A|417
9I5V|1|a|G|418
9I5V|1|a|A|419
9I5V|1|a|C|420
9I5V|1|a|A|421
9I5V|1|a|G|422
9I5V|1|a|U|423
*
9I5V|1|a|A|428
9I5V|1|a|G|429
9I5V|1|a|G|430
9I5V|1|a|A|431
9I5V|1|a|U|432
9I5V|1|a|U|433
9I5V|1|a|G|434
9I5V|1|a|U|435
9I5V|1|a|A|436
9I5V|1|a|A|437
9I5V|1|a|A|438
9I5V|1|a|C|439
9I5V|1|a|U|440
9I5V|1|a|U|441
9I5V|1|a|C|442
9I5V|1|a|U|443
9I5V|1|a|U|444
9I5V|1|a|U|445
9I5V|1|a|U|446
9I5V|1|a|A|447
9I5V|1|a|U|448
*
9I5V|1|a|A|487
9I5V|1|a|C|488
9I5V|1|a|C|489
9I5V|1|a|G|490
9I5V|1|a|U|491
9I5V|1|a|A|492
9I5V|1|a|A|493
9I5V|1|a|G|494
9I5V|1|a|A|495
9I5V|1|a|A|496
9I5V|1|a|A|497
9I5V|1|a|C|498
9I5V|1|a|A|499
*
9I5V|1|a|U|543
9I5V|1|a|G|544
9I5V|1|a|C|545
9I5V|1|a|G|546
9I5V|1|a|A|547
9I5V|1|a|G|548

Current chains

Chain a: 16S rRNA

Nearby chains

Chain c: Small ribosomal subunit protein bS16
Chain j: Small ribosomal subunit protein uS12
Chain l: Small ribosomal subunit protein uS4

J5_9I5V_007