J5_9I78_001
3D structure
- PDB id
- 9I78 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Chaetomium thermophilum ribosome-bound SND3 translocon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- AGG*CGAUGAAG*UGAACG*CG*CAU
- Length
- 22 nucleotides
- Bulged bases
- 9I78|1|L2|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9I78|1|L1|A|21
9I78|1|L1|G|22
9I78|1|L1|G|23
*
9I78|1|L2|C|35
9I78|1|L2|G|36
9I78|1|L2|A|37
9I78|1|L2|U|38
9I78|1|L2|G|39
9I78|1|L2|A|40
9I78|1|L2|A|41
9I78|1|L2|G|42
*
9I78|1|L2|U|102
9I78|1|L2|G|103
9I78|1|L2|A|104
9I78|1|L2|A|105
9I78|1|L2|C|106
9I78|1|L2|G|107
*
9I78|1|L2|C|115
9I78|1|L2|G|116
*
9I78|1|L2|C|137
9I78|1|L2|A|138
9I78|1|L2|U|139
Current chains
- Chain L1
- 26S rRNA
- Chain L2
- 5.8S rRNA
Nearby chains
- Chain LN
- Ribosomal protein L15
- Chain LX
- 60S ribosomal protein L25-like protein
- Chain Lh
- Dolichyl-diphosphooligosaccharide--protein glycotransferase
- Chain Lj
- Ribosomal protein L37
- Chain Ll
- Ribosomal protein eL39
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