J5_9I78_002
3D structure
- PDB id
- 9I78 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Chaetomium thermophilum ribosome-bound SND3 translocon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GGAGUC*GGAC*GUUAC*GCC*GCAGAUC
- Length
- 25 nucleotides
- Bulged bases
- 9I78|1|L1|U|1419
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9I78|1|L1|G|646
9I78|1|L1|G|647
9I78|1|L1|A|648
9I78|1|L1|G|649
9I78|1|L1|U|650
9I78|1|L1|C|651
*
9I78|1|L1|G|781
9I78|1|L1|G|782
9I78|1|L1|A|783
9I78|1|L1|C|784
*
9I78|1|L1|G|923
9I78|1|L1|U|924
9I78|1|L1|U|925
9I78|1|L1|A|926
9I78|1|L1|C|927
*
9I78|1|L1|G|1357
9I78|1|L1|C|1358
9I78|1|L1|C|1359
*
9I78|1|L1|G|1414
9I78|1|L1|C|1415
9I78|1|L1|A|1416
9I78|1|L1|G|1417
9I78|1|L1|A|1418
9I78|1|L1|U|1419
9I78|1|L1|C|1420
Current chains
- Chain L1
- 26S rRNA
Nearby chains
- Chain L2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LC
- 60S ribosomal protein L4-like protein
- Chain LL
- 60S ribosomal protein L13
- Chain LN
- Ribosomal protein L15
- Chain La
- 60S ribosomal protein L28-like protein
- Chain Le
- 60S ribosomal protein L32-like protein
- Chain Lq
- Putative 60S ribosomal protein
Coloring options: