J5_9I78_003
3D structure
- PDB id
- 9I78 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Chaetomium thermophilum ribosome-bound SND3 translocon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CGAG*CGUAA*UGAACGUAG*CGA*UAGGAG
- Length
- 27 nucleotides
- Bulged bases
- 9I78|1|L1|U|707, 9I78|1|L1|G|767
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9I78|1|L1|C|663
9I78|1|L1|G|664
9I78|1|L1|A|665
9I78|1|L1|G|666
*
9I78|1|L1|C|690
9I78|1|L1|G|691
9I78|1|L1|U|692
9I78|1|L1|A|693
9I78|1|L1|A|694
*
9I78|1|L1|U|701
9I78|1|L1|G|702
9I78|1|L1|A|703
9I78|1|L1|A|704
9I78|1|L1|C|705
9I78|1|L1|G|706
9I78|1|L1|U|707
9I78|1|L1|A|708
9I78|1|L1|G|709
*
9I78|1|L1|C|731
9I78|1|L1|G|732
9I78|1|L1|A|733
*
9I78|1|L1|U|764
9I78|1|L1|A|765
9I78|1|L1|G|766
9I78|1|L1|G|767
9I78|1|L1|A|768
9I78|1|L1|G|769
Current chains
- Chain L1
- 26S rRNA
Nearby chains
- Chain LC
- 60S ribosomal protein L4-like protein
- Chain LL
- 60S ribosomal protein L13
- Chain LQ
- Ribosomal protein L18-like protein
- Chain La
- 60S ribosomal protein L28-like protein
- Chain Lb
- 60S ribosomal protein L29
- Chain Li
- 60S ribosomal protein L36
Coloring options: