J5_9I78_004

3D structure

PDB id

9I78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Chaetomium thermophilum ribosome-bound SND3 translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GCAAAAUAG*UG*UG*CGGACAGGG*CAC

Length

25 nucleotides

Bulged bases

9I78|1|L1|G|2079, 9I78|1|L1|G|2084

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I78|1|L1|G|1886
9I78|1|L1|C|1887
9I78|1|L1|A|1888
9I78|1|L1|A|1889
9I78|1|L1|A|1890
9I78|1|L1|A|1891
9I78|1|L1|U|1892
9I78|1|L1|A|1893
9I78|1|L1|G|1894
*
9I78|1|L1|U|1918
9I78|1|L1|G|1919
*
9I78|1|L1|U|2072
9I78|1|L1|G|2073
*
9I78|1|L1|C|2077
9I78|1|L1|G|2078
9I78|1|L1|G|2079
9I78|1|L1|A|2080
9I78|1|L1|C|2081
9I78|1|L1|A|2082
9I78|1|L1|G|2083
9I78|1|L1|G|2084
9I78|1|L1|G|2085
*
9I78|1|L1|C|2294
9I78|1|L1|A|2295
9I78|1|L1|C|2296

Current chains

Chain L1

26S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3-like protein

Chain LR

Ribosomal protein L19

Chain LV

60S ribosomal protein l23-like protein