J5_9I88_006
3D structure
- PDB id
- 9I88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.98 Å
Loop
- Sequence
- GAAAGACC*GGAUAACA*UCGAUGUC*GGUUCAG*CGGUCC
- Length
- 37 nucleotides
- Bulged bases
- 9I88|1|A|A|2089, 9I88|1|A|A|2475, 9I88|1|A|U|2476, 9I88|1|A|U|2636
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9I88|1|A|G|2084
9I88|1|A|A|2085
9I88|1|A|A|2086
9I88|1|A|A|2087
9I88|1|A|G|2088
9I88|1|A|A|2089
9I88|1|A|C|2090
9I88|1|A|C|2091
*
9I88|1|A|G|2473
9I88|1|A|G|2474
9I88|1|A|A|2475
9I88|1|A|U|2476
9I88|1|A|A|2477
9I88|1|A|A|2478
9I88|1|A|C|2479
9I88|1|A|A|2480
*
9I88|1|A|U|2527
9I88|1|A|C|2528
9I88|1|A|G|2529
9I88|1|A|A|2530
9I88|1|A|U|2531
9I88|1|A|G|2532
9I88|1|A|U|2533
9I88|1|A|C|2534
*
9I88|1|A|G|2609
9I88|1|A|G|2610
9I88|1|A|U|2611
9I88|1|A|U|2612
9I88|1|A|C|2613
9I88|1|A|A|2614
9I88|1|A|G|2615
*
9I88|1|A|C|2633
9I88|1|A|G|2634
9I88|1|A|G|2635
9I88|1|A|U|2636
9I88|1|A|C|2637
9I88|1|A|C|2638
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 5
- Large ribosomal subunit protein bL32
- Chain D
- Transfer RNA; tRNA
- Chain G
- Large ribosomal subunit protein uL2
- Chain H
- Large ribosomal subunit protein uL3
- Chain I
- Large ribosomal subunit protein uL4
- Chain O
- Large ribosomal subunit protein uL15
- Chain P
- Large ribosomal subunit protein uL16
- Chain V
- Large ribosomal subunit protein uL22
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