J5_9I89_009
3D structure
- PDB id
- 9I89 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the A2058-dimethylated Staphylococcus aureus 70S ribosome complexed with clincelin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.01 Å
Loop
- Sequence
- CAAG*CGGACGGG*CAC*GAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 9I89|1|a|A|108, 9I89|1|a|C|360
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9I89_009 not in the Motif Atlas
- Homologous match to J5_6CZR_021
- Geometric discrepancy: 0.1897
- The information below is about J5_6CZR_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.5
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
9I89|1|a|C|59
9I89|1|a|A|60
9I89|1|a|A|61
9I89|1|a|G|62
*
9I89|1|a|C|105
9I89|1|a|G|106
9I89|1|a|G|107
9I89|1|a|A|108
9I89|1|a|C|109
9I89|1|a|G|110
9I89|1|a|G|111
9I89|1|a|G|112
*
9I89|1|a|C|322
9I89|1|a|A|323
9I89|1|a|C|324
*
9I89|1|a|G|345
9I89|1|a|A|346
9I89|1|a|C|347
*
9I89|1|a|G|358
9I89|1|a|G|359
9I89|1|a|C|360
9I89|1|a|A|361
9I89|1|a|G|362
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain N
- Large ribosomal subunit protein uL14
- Chain S
- Large ribosomal subunit protein bL19
- Chain m
- Small ribosomal subunit protein uS12
- Chain q
- Small ribosomal subunit protein bS16
- Chain u
- Small ribosomal subunit protein bS20
Coloring options: