J5_9J1M_007
3D structure
- PDB id
- 9J1M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- KU13-bond Mycobacterium tuberculosis 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.33 Å
Loop
- Sequence
- UUCA*UUUA*UG*CG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 9J1M|1|A|C|2313, 9J1M|1|A|G|2666, 9J1M|1|A|G|2667, 9J1M|1|A|A|2668, 9J1M|1|A|U|2669
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9J1M_007 not in the Motif Atlas
- Homologous match to J5_9DFE_007
- Geometric discrepancy: 0.09
- The information below is about J5_9DFE_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
9J1M|1|A|U|2311
9J1M|1|A|U|2312
9J1M|1|A|C|2313
9J1M|1|A|A|2314
*
9J1M|1|A|U|2481
9J1M|1|A|U|2482
9J1M|1|A|U|2483
9J1M|1|A|A|2484
*
9J1M|1|A|U|2496
9J1M|1|A|G|2497
*
9J1M|1|A|C|2519
9J1M|1|A|G|2520
*
9J1M|1|A|C|2665
9J1M|1|A|G|2666
9J1M|1|A|G|2667
9J1M|1|A|A|2668
9J1M|1|A|U|2669
9J1M|1|A|A|2670
9J1M|1|A|A|2671
9J1M|1|A|A|2672
9J1M|1|A|A|2673
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 1
- Large ribosomal subunit protein bL33A
- Chain 3
- Large ribosomal subunit protein bL35
- Chain C
- Large ribosomal subunit protein uL2
- Chain L
- Large ribosomal subunit protein uL15
- Chain W
- Large ribosomal subunit protein bL27
- Chain X
- Large ribosomal subunit protein bL28
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