J5_9JMK_004

3D structure

PDB id

9JMK (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S Ribosomal Subunit precursor state III

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GGAACUAGGCAAAAUGG*CG*UC*GAUACCAGC*GGCUGUC

Length

37 nucleotides

Bulged bases

9JMK|1|A|U|1758, 9JMK|1|A|G|1763, 9JMK|1|A|G|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9JMK|1|A|G|1666
9JMK|1|A|G|1667
9JMK|1|A|A|1668
9JMK|1|A|A|1669
9JMK|1|A|C|1670
9JMK|1|A|U|1671
9JMK|1|A|A|1672
9JMK|1|A|G|1673
9JMK|1|A|G|1674
9JMK|1|A|C|1675
9JMK|1|A|A|1676
9JMK|1|A|A|1677
9JMK|1|A|A|1678
9JMK|1|A|A|1679
9JMK|1|A|U|1680
9JMK|1|A|G|1681
9JMK|1|A|G|1682
*
9JMK|1|A|C|1706
9JMK|1|A|G|1707
*
9JMK|1|A|U|1751
9JMK|1|A|C|1752
*
9JMK|1|A|G|1756
9JMK|1|A|A|1757
9JMK|1|A|U|1758
9JMK|1|A|A|1759
9JMK|1|A|C|1760
9JMK|1|A|C|1761
9JMK|1|A|A|1762
9JMK|1|A|G|1763
9JMK|1|A|C|1764
*
9JMK|1|A|G|1988
9JMK|1|A|G|1989
9JMK|1|A|C|1990
9JMK|1|A|U|1991
9JMK|1|A|G|1992
9JMK|1|A|U|1993
9JMK|1|A|C|1994

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain K

50S ribosomal protein L14

Chain P

50S ribosomal protein L19