J5_9JPM_004

3D structure

PDB id

9JPM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5s2U34) and mRNA(AAA)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.43 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

9JPM|1|a|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9JPM|1|a|C|47
9JPM|1|a|G|48
9JPM|1|a|A|49
9JPM|1|a|U|50
9JPM|1|a|G|51
9JPM|1|a|A|52
9JPM|1|a|A|53
9JPM|1|a|G|54
*
9JPM|1|a|C|116
9JPM|1|a|G|117
9JPM|1|a|A|118
9JPM|1|a|A|119
9JPM|1|a|U|120
9JPM|1|a|G|121
*
9JPM|1|a|C|130
9JPM|1|a|A|131
*
9JPM|1|a|U|148
9JPM|1|a|A|149
9JPM|1|a|U|150
*
9JPM|1|a|A|176
9JPM|1|a|G|177
9JPM|1|a|G|178

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34