J5_9JPP_004

3D structure

PDB id

9JPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5s2U34) and mRNA(AAG)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

9JPP|1|a|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9JPP|1|a|C|47
9JPP|1|a|G|48
9JPP|1|a|A|49
9JPP|1|a|U|50
9JPP|1|a|G|51
9JPP|1|a|A|52
9JPP|1|a|A|53
9JPP|1|a|G|54
*
9JPP|1|a|C|116
9JPP|1|a|G|117
9JPP|1|a|A|118
9JPP|1|a|A|119
9JPP|1|a|U|120
9JPP|1|a|G|121
*
9JPP|1|a|C|130
9JPP|1|a|A|131
*
9JPP|1|a|U|148
9JPP|1|a|A|149
9JPP|1|a|U|150
*
9JPP|1|a|A|176
9JPP|1|a|G|177
9JPP|1|a|G|178

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34