J5_9KDV_006
3D structure
- PDB id
- 9KDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- CUUGU*AAAUAACA*UGGAAUGAGUCCA*UUAACGAGGAUCCAUU*AAUAG
- Length
- 47 nucleotides
- Bulged bases
- 9KDV|1|S2|C|594
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9KDV|1|S2|C|30
9KDV|1|S2|U|31
9KDV|1|S2|U|32
9KDV|1|S2|G|33
9KDV|1|S2|U|34
*
9KDV|1|S2|A|522
9KDV|1|S2|A|523
9KDV|1|S2|A|524
9KDV|1|S2|U|525
9KDV|1|S2|A|526
9KDV|1|S2|A|527
9KDV|1|S2|C|528
9KDV|1|S2|A|529
*
9KDV|1|S2|U|558
9KDV|1|S2|G|559
9KDV|1|S2|G|560
9KDV|1|S2|A|561
9KDV|1|S2|A|562
9KDV|1|S2|U|563
9KDV|1|S2|G|564
9KDV|1|S2|A|565
9KDV|1|S2|G|566
9KDV|1|S2|U|567
9KDV|1|S2|C|568
9KDV|1|S2|C|569
9KDV|1|S2|A|570
*
9KDV|1|S2|U|582
9KDV|1|S2|U|583
9KDV|1|S2|A|584
9KDV|1|S2|A|585
9KDV|1|S2|C|586
9KDV|1|S2|G|587
9KDV|1|S2|A|588
9KDV|1|S2|G|589
9KDV|1|S2|G|590
9KDV|1|S2|A|591
9KDV|1|S2|U|592
9KDV|1|S2|C|593
9KDV|1|S2|C|594
9KDV|1|S2|A|595
9KDV|1|S2|U|596
9KDV|1|S2|U|597
*
9KDV|1|S2|A|641
9KDV|1|S2|A|642
9KDV|1|S2|U|643
9KDV|1|S2|A|644
9KDV|1|S2|G|645
Current chains
- Chain S2
- Mus musculus 18S ribosomal RNA
Nearby chains
- Chain SJ
- Small ribosomal subunit protein uS4
- Chain SX
- Small ribosomal subunit protein uS12
- Chain SY
- Small ribosomal subunit protein eS24
- Chain Se
- Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein
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