J5_9KMT_001

3D structure

PDB id

9KMT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat SARSr-CoV RaTG15 Nsp1 bound to the Human 40S Ribosomal subunit-State1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.81 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUG*CCAU*AUAG

Length

26 nucleotides

Bulged bases

9KMT|1|2|C|593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KMT|1|2|C|30
9KMT|1|2|U|31
9KMT|1|2|U|32
9KMT|1|2|G|33
9KMT|1|2|U|34
*
9KMT|1|2|A|521
9KMT|1|2|A|522
9KMT|1|2|A|523
9KMT|1|2|U|524
9KMT|1|2|A|525
9KMT|1|2|A|526
9KMT|1|2|C|527
*
9KMT|1|2|G|558
9KMT|1|2|G|559
9KMT|1|2|A|560
9KMT|1|2|A|561
9KMT|1|2|U|562
9KMT|1|2|G|563
*
9KMT|1|2|C|592
9KMT|1|2|C|593
9KMT|1|2|A|594
9KMT|1|2|U|595
*
9KMT|1|2|A|641
9KMT|1|2|U|642
9KMT|1|2|A|643
9KMT|1|2|G|644

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

Small ribosomal subunit protein uS4

Chain X

Small ribosomal subunit protein uS12

Chain e

Small ribosomal subunit protein eS30