J5_9KMW_002

3D structure

PDB id

9KMW (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARSr-MpCoV-GX Nsp1 bound to the Human 40S Ribosomal subunit-State2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.73 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAUCCAU*AUAG

Length

35 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KMW|1|2|C|30
9KMW|1|2|U|31
9KMW|1|2|U|32
9KMW|1|2|G|33
9KMW|1|2|U|34
*
9KMW|1|2|A|521
9KMW|1|2|A|522
9KMW|1|2|A|523
9KMW|1|2|U|524
9KMW|1|2|A|525
9KMW|1|2|A|526
9KMW|1|2|C|527
*
9KMW|1|2|G|558
9KMW|1|2|G|559
9KMW|1|2|A|560
9KMW|1|2|A|561
9KMW|1|2|U|562
9KMW|1|2|G|563
9KMW|1|2|A|564
9KMW|1|2|G|565
*
9KMW|1|2|C|585
9KMW|1|2|G|586
9KMW|1|2|A|587
9KMW|1|2|G|588
9KMW|1|2|G|589
9KMW|1|2|A|590
9KMW|1|2|U|591
9KMW|1|2|C|592
9KMW|1|2|C|593
9KMW|1|2|A|594
9KMW|1|2|U|595
*
9KMW|1|2|A|641
9KMW|1|2|U|642
9KMW|1|2|A|643
9KMW|1|2|G|644

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

Small ribosomal subunit protein uS4

Chain X

Small ribosomal subunit protein uS12

Chain e

Small ribosomal subunit protein eS30