J5_9KMW_004

3D structure

PDB id

9KMW (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARSr-MpCoV-GX Nsp1 bound to the Human 40S Ribosomal subunit-State2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.73 Å

Loop

Sequence

GGUCGCUCG*CGGG*UGC*GCCG*CGACCC

Length

26 nucleotides

Bulged bases

9KMW|1|2|G|126, 9KMW|1|2|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KMW|1|2|G|122
9KMW|1|2|G|123
9KMW|1|2|U|124
9KMW|1|2|C|125
9KMW|1|2|G|126
9KMW|1|2|C|127
9KMW|1|2|U|128
9KMW|1|2|C|129
9KMW|1|2|G|130
*
9KMW|1|2|C|182
9KMW|1|2|G|183
9KMW|1|2|G|184
9KMW|1|2|G|185
*
9KMW|1|2|U|214
9KMW|1|2|G|215
9KMW|1|2|C|216
*
9KMW|1|2|G|309
9KMW|1|2|C|310
9KMW|1|2|C|311
9KMW|1|2|G|312
*
9KMW|1|2|C|337
9KMW|1|2|G|338
9KMW|1|2|A|339
9KMW|1|2|C|340
9KMW|1|2|C|341
9KMW|1|2|C|342

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

Small ribosomal subunit protein eS4, X isoform

Chain G

Small ribosomal subunit protein eS6

Chain I

Small ribosomal subunit protein eS8