J5_9KMZ_001

3D structure

PDB id

9KMZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat MERSr-CoV NL140422 Nsp1 bound to the Human 40S Ribosomal subunit-State1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUG*CCAU*AUAG

Length

26 nucleotides

Bulged bases

9KMZ|1|2|C|593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KMZ|1|2|C|30
9KMZ|1|2|U|31
9KMZ|1|2|U|32
9KMZ|1|2|G|33
9KMZ|1|2|U|34
*
9KMZ|1|2|A|521
9KMZ|1|2|A|522
9KMZ|1|2|A|523
9KMZ|1|2|U|524
9KMZ|1|2|A|525
9KMZ|1|2|A|526
9KMZ|1|2|C|527
*
9KMZ|1|2|G|558
9KMZ|1|2|G|559
9KMZ|1|2|A|560
9KMZ|1|2|A|561
9KMZ|1|2|U|562
9KMZ|1|2|G|563
*
9KMZ|1|2|C|592
9KMZ|1|2|C|593
9KMZ|1|2|A|594
9KMZ|1|2|U|595
*
9KMZ|1|2|A|641
9KMZ|1|2|U|642
9KMZ|1|2|A|643
9KMZ|1|2|G|644

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

Small ribosomal subunit protein uS4

Chain X

Small ribosomal subunit protein uS12

Chain e

Small ribosomal subunit protein eS30