J5_9KN0_003

3D structure

PDB id

9KN0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat MERSr-CoV NL140422 Nsp1 bound to the Human 40S Ribosomal subunit-State2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CAUG*CGAAUGGC*GAG*CAC*GGCAG

Length

23 nucleotides

Bulged bases

9KN0|1|2|A|92, 9KN0|1|2|C|472

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KN0|1|2|C|53
9KN0|1|2|A|54
9KN0|1|2|U|55
9KN0|1|2|G|56
*
9KN0|1|2|C|89
9KN0|1|2|G|90
9KN0|1|2|A|91
9KN0|1|2|A|92
9KN0|1|2|U|93
9KN0|1|2|G|94
9KN0|1|2|G|95
9KN0|1|2|C|96
*
9KN0|1|2|G|434
9KN0|1|2|A|435
9KN0|1|2|G|436
*
9KN0|1|2|C|457
9KN0|1|2|A|458
9KN0|1|2|C|459
*
9KN0|1|2|G|470
9KN0|1|2|G|471
9KN0|1|2|C|472
9KN0|1|2|A|473
9KN0|1|2|G|474

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

Small ribosomal subunit protein eS4, X isoform

Chain G

Small ribosomal subunit protein eS6

Chain I

Small ribosomal subunit protein eS8

Chain J

Small ribosomal subunit protein uS4

Chain Y

Small ribosomal subunit protein eS24