J5_9KZU_006
3D structure
- PDB id
- 9KZU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (non-rotated state) in complexed with eIF3
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CUUGU*AAAUAAC*GGAAUGAG*CGAGGAUCCAU*AUAG
- Length
- 35 nucleotides
- Bulged bases
- 9KZU|1|S2|A|587, 9KZU|1|S2|A|590, 9KZU|1|S2|U|591, 9KZU|1|S2|C|593
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9KZU|1|S2|C|30
9KZU|1|S2|U|31
9KZU|1|S2|U|32
9KZU|1|S2|G|33
9KZU|1|S2|U|34
*
9KZU|1|S2|A|521
9KZU|1|S2|A|522
9KZU|1|S2|A|523
9KZU|1|S2|U|524
9KZU|1|S2|A|525
9KZU|1|S2|A|526
9KZU|1|S2|C|527
*
9KZU|1|S2|G|558
9KZU|1|S2|G|559
9KZU|1|S2|A|560
9KZU|1|S2|A|561
9KZU|1|S2|U|562
9KZU|1|S2|G|563
9KZU|1|S2|A|564
9KZU|1|S2|G|565
*
9KZU|1|S2|C|585
9KZU|1|S2|G|586
9KZU|1|S2|A|587
9KZU|1|S2|G|588
9KZU|1|S2|G|589
9KZU|1|S2|A|590
9KZU|1|S2|U|591
9KZU|1|S2|C|592
9KZU|1|S2|C|593
9KZU|1|S2|A|594
9KZU|1|S2|U|595
*
9KZU|1|S2|A|641
9KZU|1|S2|U|642
9KZU|1|S2|A|643
9KZU|1|S2|G|644
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain SJ
- 40S ribosomal protein S9
- Chain SX
- 40S ribosomal protein S23
- Chain Se
- 40S ribosomal protein S30
Coloring options: