J5_9KZU_007
3D structure
- PDB id
- 9KZU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (non-rotated state) in complexed with eIF3
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CAUG*CGAAUGGC*GAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 9KZU|1|S2|A|92, 9KZU|1|S2|C|472
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9KZU_007 not in the Motif Atlas
- Homologous match to J5_9PN5_009
- Geometric discrepancy: 0.074
- The information below is about J5_9PN5_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_58574.4
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
9KZU|1|S2|C|53
9KZU|1|S2|A|54
9KZU|1|S2|U|55
9KZU|1|S2|G|56
*
9KZU|1|S2|C|89
9KZU|1|S2|G|90
9KZU|1|S2|A|91
9KZU|1|S2|A|92
9KZU|1|S2|U|93
9KZU|1|S2|G|94
9KZU|1|S2|G|95
9KZU|1|S2|C|96
*
9KZU|1|S2|G|434
9KZU|1|S2|A|435
9KZU|1|S2|G|436
*
9KZU|1|S2|C|457
9KZU|1|S2|A|458
9KZU|1|S2|C|459
*
9KZU|1|S2|G|470
9KZU|1|S2|G|471
9KZU|1|S2|C|472
9KZU|1|S2|A|473
9KZU|1|S2|G|474
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain LV
- 60S ribosomal protein L23
- Chain SE
- 40S ribosomal protein S4, X isoform
- Chain SG
- 40S ribosomal protein S6
- Chain SI
- 40S ribosomal protein S8
- Chain SJ
- 40S ribosomal protein S9
- Chain SY
- 40S ribosomal protein S24
Coloring options: