J5_9MNC_008
3D structure
- PDB id
- 9MNC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human 80S ribosome bound to small molecule SW393071
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.33 Å
Loop
- Sequence
- CAUG*CGAA(PSU)GGC*GA(OMG)*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 9MNC|1|S2|A|92, 9MNC|1|S2|C|472
- QA status
- Modified nucleotides: PSU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9MNC|1|S2|C|53
9MNC|1|S2|A|54
9MNC|1|S2|U|55
9MNC|1|S2|G|56
*
9MNC|1|S2|C|89
9MNC|1|S2|G|90
9MNC|1|S2|A|91
9MNC|1|S2|A|92
9MNC|1|S2|PSU|93
9MNC|1|S2|G|94
9MNC|1|S2|G|95
9MNC|1|S2|C|96
*
9MNC|1|S2|G|434
9MNC|1|S2|A|435
9MNC|1|S2|OMG|436
*
9MNC|1|S2|C|457
9MNC|1|S2|A|458
9MNC|1|S2|C|459
*
9MNC|1|S2|G|470
9MNC|1|S2|G|471
9MNC|1|S2|C|472
9MNC|1|S2|A|473
9MNC|1|S2|G|474
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain LV
- Large ribosomal subunit protein uL14
- Chain SE
- Small ribosomal subunit protein eS4, X isoform
- Chain SG
- Small ribosomal subunit protein eS6
- Chain SI
- Small ribosomal subunit protein eS8
- Chain SJ
- Small ribosomal subunit protein uS4
- Chain SY
- Isoform 3 of Small ribosomal subunit protein eS24
Coloring options: