J5_9MTP_001

3D structure

PDB id

9MTP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

9MTP|1|1A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9MTP|1|1A|C|47
9MTP|1|1A|G|48
9MTP|1|1A|A|49
9MTP|1|1A|U|50
9MTP|1|1A|G|51
9MTP|1|1A|A|52
9MTP|1|1A|A|53
9MTP|1|1A|G|54
*
9MTP|1|1A|C|116
9MTP|1|1A|G|117
9MTP|1|1A|A|118
9MTP|1|1A|A|119
9MTP|1|1A|U|120
9MTP|1|1A|G|121
*
9MTP|1|1A|C|130
9MTP|1|1A|G|131
*
9MTP|1|1A|C|148
9MTP|1|1A|A|149
9MTP|1|1A|C|150
*
9MTP|1|1A|G|176
9MTP|1|1A|G|177
9MTP|1|1A|G|178

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34

Chain 1X

50S ribosomal protein L23