J5_9N6Z_003

3D structure

PDB id

9N6Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

SSU processome maturation and disassembly, State D

Experimental method

ELECTRON MICROSCOPY

Resolution

4.74 Å

Loop

Sequence

CAUG*CGAAUGGC*GAG*CAC*GGCAG

Length

23 nucleotides

Bulged bases

9N6Z|1|L1|A|93, 9N6Z|1|L1|A|425

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9N6Z|1|L1|C|54
9N6Z|1|L1|A|55
9N6Z|1|L1|U|56
9N6Z|1|L1|G|57
*
9N6Z|1|L1|C|90
9N6Z|1|L1|G|91
9N6Z|1|L1|A|92
9N6Z|1|L1|A|93
9N6Z|1|L1|U|94
9N6Z|1|L1|G|95
9N6Z|1|L1|G|96
9N6Z|1|L1|C|97
*
9N6Z|1|L1|G|386
9N6Z|1|L1|A|387
9N6Z|1|L1|G|388
*
9N6Z|1|L1|C|409
9N6Z|1|L1|A|410
9N6Z|1|L1|C|411
*
9N6Z|1|L1|G|422
9N6Z|1|L1|G|423
9N6Z|1|L1|C|424
9N6Z|1|L1|A|425
9N6Z|1|L1|G|426

Current chains

Chain L1

18S rRNA

Nearby chains

Chain L4

40S ribosomal protein S4-A

Chain L8

40S ribosomal protein S8-A

Chain LF

40S ribosomal protein S24-A

Chain LV

Ribosome biogenesis protein ENP2